Data Integration & Data Mining Tool BHF CoRE Bioin as long as matics Data Mining Tool Data Mining Tool Data Integration

Data Integration & Data Mining Tool BHF CoRE Bioin as long as matics Data Mining Tool Data Mining Tool Data Integration www.phwiki.com

Data Integration & Data Mining Tool BHF CoRE Bioin as long as matics Data Mining Tool Data Mining Tool Data Integration

Weinstein, Rita, Online Editor has reference to this Academic Journal, PHwiki organized this Journal Data Integration & Data Mining Tool Donald Dunbar BHF CoRE Bioin as long as matics Team Edinburgh Bioin as long as matics Meeting April 2013 BHF CoRE Bioin as long as matics Data Integration in addition to our Data Mining Tool Our strategy is to help biologists make the most of their ‘-omics’ data We analyse array in addition to sequence data using current methods Biologists mine their results in a custom built, secure web based plat as long as m We help integrate other relevant data from biologist’s lab in addition to the literature

Katharine Gibbs School US www.phwiki.com

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Data Mining Tool Wish list Web accessible Secure Complex queries across datasets Technology agnostic Query cross species Annotation, statistics in addition to graphs Links to external databases Include downstream tools Data Mining Tool Login via EASE or htaccess (+ vpn) Built in PHP with mySQL back end Generic database structure as long as statistics counts, intensity, fold change, p-value Separate annotation tables Includes experiment details in addition to QC info Query builder type interface Output as tables with links Gene set enrichment, heat-map in addition to literature

Weinstein, Rita PDA Newsletter Online Editor www.phwiki.com

Data Integration Across technologies array, sequencing gene expression, methylation, proteomics, genetics Across species Human, mouse, rat, fly, fish At the gene level Probe level as long as within array Entrez gene within species orthologous groups across species

Development New plat as long as m: Drupal Some nice features New look in addition to feel Web services interactions, diseases, TF binding sites, miRNA More use of literature data Top 10 co-cited on gene detail page Better visualisation Better text mining Correlation data (expression profiles) searchable with other stats Cross experiment gene sets Thanks Jon Manning John Mullins Our collaborators British Heart Foundation

qmri.bioinf@ed.ac.uk www.bioinf.mvm.ed.ac.uk “Providing bioin as long as matics services to biology teams throughout the research process”

Weinstein, Rita Online Editor

Weinstein, Rita is from United States and they belong to PDA Newsletter and they are from  Litchfield Park, United States got related to this Particular Journal. and Weinstein, Rita deal with the subjects like Civil Rights; Ethical/Moral Issues; Human Rights and Liberties; Minority Issues; Social Issues

Journal Ratings by Katharine Gibbs School

This Particular Journal got reviewed and rated by Katharine Gibbs School and short form of this particular Institution is US and gave this Journal an Excellent Rating.